miRBase entry: oan-mir-1421f

Stem-loop oan-mir-1421f


Accession
MI0006767
Description
Ornithorhynchus anatinus oan-mir-1421f precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

33 reads, 59 reads per million, 1 experiments
acgcaguggggugugUGGAAGUUGCACAUCAUGCCGUgugaugguggaauaugcUGCAUAGUGUGUGACCUCCCUAcacagugcugugu
((((((((..(((((.(((.(((((((((.((((.(((((.(.....).))))).)))).))))))))).))).)))))..))))))))

Structure
        gg     U   A         C    C     a g 
acgcagug  gugug GGA GUUGCACAU AUGC GUgug u g
||||||||  ||||| ||| ||||||||| |||| ||||| | u
ugugucgu  cacAU CCU CAGUGUGUG UACG cguau a g
        ga     C   C         A    U     a g 


Annotation confidence Not enough data
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Genome context
Contig22847: 5019-5107 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421f-5p

Accession MIMAT0006973
Description Ornithorhynchus anatinus oan-miR-1421f-5p mature miRNA
Sequence 16 - UGGAAGUUGCACAUCAUGCCGU - 37
Evidence experimental
Illumina [1]

Mature oan-miR-1421f-3p

Accession MIMAT0006974
Description Ornithorhynchus anatinus oan-miR-1421f-3p mature miRNA
Sequence 55 - UGCAUAGUGUGUGACCUCCCUA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004