miRBase entry: oan-mir-1421i-1

Stem-loop oan-mir-1421i-1


Accession
MI0006770
Description
Ornithorhynchus anatinus oan-mir-1421i-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

415 reads, 221 reads per million, 4 experiments
gugAGGAGGCCGUAUCUCCUGCGGagugaugguggaaucUGCUGCGAAGUGUUCGACCUCC
....(((((.((.((...((.((.((((((......))).))).)).)).)).)).)))))

Structure
gugA     C  U  CUC  G  G   -   gg 
    GGAGG CG AU   CU CG agu gau  u
    ||||| || ||   || || ||| |||   
    CCUCC GC UG   GA GC UCG cua  g
----     A  U  --U  A  G   U   ag 


Annotation confidence Not enough data
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Genome context
Contig22847: 9450-9510 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421i-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421i-1-3p

Accession MIMAT0006980
Description Ornithorhynchus anatinus oan-miR-1421i-1-3p mature miRNA
Sequence 40 - UGCUGCGAAGUGUUCGACCUCC - 61
Evidence experimental
Illumina [1]

Mature oan-miR-1421i-5p

Accession MIMAT0006979
Description Ornithorhynchus anatinus oan-miR-1421i-5p mature miRNA
Sequence 4 - AGGAGGCCGUAUCUCCUGCGG - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004