miRBase entry: oan-mir-155

Stem-loop oan-mir-155


Accession
MI0006775
Description
Ornithorhynchus anatinus oan-mir-155 precursor miRNA
Gene family
MIPF0000157; mir-155


Sequence

2514 reads, 124 reads per million, 5 experiments
gggacgccgugggccgcaggucgUUAAUGCUAAUCGUGAUAGGGGUuuucucugucugacugaCCCCUGCCCGUUAGCAUUAGCaacgugcggccccucgaaccc
((..((..(.((((((((.((.(((((((((((.((.(.((((((((.((.......))..)))))))).)))))))))))))).)).))))))))).))..)).

Structure
-  ga  cc u        g  c           U  U A        -u  uc 
 gg  cg  g gggccgca gu gUUAAUGCUAA CG G UAGGGGUu  uc  u
 ||  ||  | |||||||| || ||||||||||| || | ||||||||  ||  g
 cc  gc  c cccggcgu ca CGAUUACGAUU GC C GUCCCCag  ag  u
c  aa  -u -        g  a           -  - C        uc  uc 


Annotation confidence Not enough data
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Genome context
Contig248467: 539-643 [+]

Database links

Mature oan-miR-155-5p

Accession MIMAT0006988
Description Ornithorhynchus anatinus oan-miR-155-5p mature miRNA
Sequence 24 - UUAAUGCUAAUCGUGAUAGGGGU - 46
Evidence experimental
Illumina [1]

Mature oan-miR-155-3p

Accession MIMAT0006989
Description Ornithorhynchus anatinus oan-miR-155-3p mature miRNA
Sequence 64 - CCCCUGCCCGUUAGCAUUAGC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004