miRBase entry: oan-mir-26-1

Stem-loop oan-mir-26-1


Accession
MI0006777
Description
Ornithorhynchus anatinus oan-mir-26-1 precursor miRNA
Gene family
MIPF0000043; mir-26


Sequence

239270 reads, 5076 reads per million, 5 experiments
ggcucccgcccggUUCAAGUAAUCCAGGAUAGGCUgucggcaccacggCCUGUCCUCGGUUACUUGUCUCgggagguggcc
((((.((.(((((..(((((((((.((((((((((((.(....))))))))))))).)))))))))..))))).)).))))

Structure
    c  g     UU         C            c g 
ggcu cc cccgg  CAAGUAAUC AGGAUAGGCUgu g c
|||| || |||||  ||||||||| |||||||||||| |  
ccgg gg gggCU  GUUCAUUGG UCCUGUCCggca c a
    u  a     CU         C            - c 


Annotation confidence High
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Genome context
Contig26164: 9817-9897 [-]

Database links

Mature oan-miR-26-5p

Accession MIMAT0006991
Description Ornithorhynchus anatinus oan-miR-26-5p mature miRNA
Sequence 14 - UUCAAGUAAUCCAGGAUAGGCU - 35
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-26-1-3p

Accession MIMAT0006992
Description Ornithorhynchus anatinus oan-miR-26-1-3p mature miRNA
Sequence 49 - CCUGUCCUCGGUUACUUGUCUC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004