miRBase entry: oan-mir-206

Stem-loop oan-mir-206


Accession
MI0006779
Description
Ornithorhynchus anatinus oan-mir-206 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

227491 reads, 3201 reads per million, 5 experiments
aggaggccgccccggccaacugcucuccgagacaACAUGCUUCUUUAUAUCCCCAuauggauuacgcugcuaUGGAAUGUAAGGAAGUGUGUGGuuucgggccagagcccucccggccgccu
(((.(((((....(((...(((...((((((((.((((((((((((((((..((((((((......))).))))).)))))))))))))))).)))))))).))).)))....))))).)))

Structure
   a     cccc   caa   cuc        a                CC     -   au 
agg ggccg    ggc   cug   uccgagac ACAUGCUUCUUUAUAU  CCAua ugg  u
||| |||||    |||   |||   |||||||| ||||||||||||||||  ||||| |||   
ucc ccggc    ccg   gac   gggcuuuG UGUGUGAAGGAAUGUA  GGUau guc  a
   g     ccuc   --a   --c        G                -A     c   gc 


Annotation confidence Not enough data
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Genome context
Contig26568: 2813-2934 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-206-5p

Accession MIMAT0006994
Description Ornithorhynchus anatinus oan-miR-206-5p mature miRNA
Sequence 35 - ACAUGCUUCUUUAUAUCCCCA - 55
Evidence experimental
Illumina [1]

Mature oan-miR-206-3p

Accession MIMAT0006995
Description Ornithorhynchus anatinus oan-miR-206-3p mature miRNA
Sequence 73 - UGGAAUGUAAGGAAGUGUGUGG - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004