miRBase entry: oan-mir-215

Stem-loop oan-mir-215


Accession
MI0006783
Description
Ornithorhynchus anatinus oan-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192


Sequence

28690 reads, 503 reads per million, 5 experiments
caauccaggaagaaaugguguacaggaaaAUGACCUAUGAAUUGACAGACaguauauuuagauugUCUGUCAUUUCUGUAGGCCAAAguucugcaugccuucacugcuccggcgccag
....((.(((((....(((((.(((((...((.((((((((.(((((((((((........))))))))))).))).))))).))...))))).)))))....))..)))))......

Structure
--caau  a   --  aaau     a     aaA  A     -   U           aua 
      cc gga  ag    ggugu cagga   UG CCUAU GAA UGACAGACagu   u
      || |||  ||    ||||| |||||   || ||||| ||| |||||||||||    
      gg ccu  uc    ccgua gucuu   AC GGAUG CUU ACUGUCUguua   u
gaccgc  -   cg  acuu     c     gAA  C     U   U           gau 


Annotation confidence High
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Genome context
Contig27098: 4335-4452 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-215-5p

Accession MIMAT0007000
Description Ornithorhynchus anatinus oan-miR-215-5p mature miRNA
Sequence 30 - AUGACCUAUGAAUUGACAGAC - 50
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-215-3p

Accession MIMAT0007001
Description Ornithorhynchus anatinus oan-miR-215-3p mature miRNA
Sequence 66 - UCUGUCAUUUCUGUAGGCCAAA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004