Stem-loop oan-mir-153-1

Accession

MI0006786

Description

Ornithorhynchus anatinus oan-mir-153-1 precursor miRNA

Gene family

MIPF0000050; mir-153

Sequence

7135 reads, 147 reads per million, 5 experiments

ugucugucucugccugucugucucucugucucucucucucucucacagcugccaguGUCAUUUUUGUGAUCUGCAGCUuaguacucuggcuccagUUGCAUAGUCACAAAAGUGAUCauuggcagguguggcggcugcacggacg
.(((((((.(((((..............................(((.((((((((((((((((((((((.(((((((.(((......)))..)))))))..))))))))))))).))))))))).))))))))..).)))))).

Structure

u      - -u     ugucugucucucugucucucucucucucuc   g         -             -C       -u   ac 
 gucugu c  cugcc                              aca cugccaguG UCAUUUUUGUGAU  UGCAGCU  agu  u
 |||||| |  |||||                              ||| ||||||||| |||||||||||||  |||||||  |||   
 caggca g  ggcgg                              ugu gacgguuaC AGUGAAAACACUG  ACGUUga  ucg  c
g      c uc     ------------------------------   g         U             AU       cc   gu 

Annotation confidence High

Genome context

Contig28100: 5117-5261 [-]

Mature oan-miR-153-1-5p

• Accession: MIMAT0007004
• Description: Ornithorhynchus anatinus oan-miR-153-1-5p mature miRNA
• Sequence: 57 - GUCAUUUUUGUGAUCUGCAGCU - 78
• Evidence: experimental ; Illumina [1]

Mature oan-miR-153-3p

• Accession: MIMAT0007005
• Description: Ornithorhynchus anatinus oan-miR-153-3p mature miRNA
• Sequence: 96 - UUGCAUAGUCACAAAAGUGAUC - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004