miRBase entry: oan-mir-146b

Stem-loop oan-mir-146b


Accession
MI0006788
Description
Ornithorhynchus anatinus oan-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

262767 reads, 13751 reads per million, 5 experiments
aggcccaaaugcggugcuuggcucUGAGAACUGAAUUCCAUAGGCUgugaguugaugaggauGCCCUAGGGAUUCAGUUCCACAgcccagcaacccacagcacuggccu
(((((....((.((((((.((((.((.((((((((((((.((((.(((............))).)))))))))))))))))).)))).))))..)).)).....)))))

Structure
     -caaa  c  --    u    c  A            A    C   gaguu 
aggcc     ug gg  ugcu ggcu UG GAACUGAAUUCC UAGG Ugu     g
|||||     || ||  |||| |||| || |||||||||||| |||| |||      
uccgg     ac cc  acga ccgA AC CUUGACUUAGGG AUCC Gua     a
     ucacg  a  ca    c    C  -            -    C   ggagu 


Annotation confidence High
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Genome context
Contig29185: 8147-8255 [+]

Database links

Mature oan-miR-146b-5p

Accession MIMAT0007007
Description Ornithorhynchus anatinus oan-miR-146b-5p mature miRNA
Sequence 25 - UGAGAACUGAAUUCCAUAGGCU - 46
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-146b-3p

Accession MIMAT0007008
Description Ornithorhynchus anatinus oan-miR-146b-3p mature miRNA
Sequence 63 - GCCCUAGGGAUUCAGUUCCACA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004