Stem-loop oan-mir-458

Accession

MI0006789

Description

Ornithorhynchus anatinus oan-mir-458 precursor miRNA

Gene family

MIPF0000179; mir-458

Sequence

77015 reads, 1478 reads per million, 5 experiments

ccagcgcugcuuccugcucggugcagauggcAGCGCCAUUUUCAGAGCUAUaaacaguaucauugccAUAGCUCUUUGAAUGGUACUGCcauauguacuggaaaaucagcucucagg
..((.((((.((((.....((((((.(((((((.(((((((..((((((((...((((...))))..))))))))..))))))).))))))).))))))))))...)))).))....

Structure

--cc  c    --c    ugcuc      g       C       UC        aaa    a 
    ag gcug   uucc     ggugca auggcAG GCCAUUU  AGAGCUAU   cagu  
    || ||||   ||||     |||||| ||||||| |||||||  ||||||||   |||| u
    uc cgac   aagg     ucaugu uacCGUC UGGUAAG  UCUCGAUA   guua  
ggac  u    uaa    -----      a       A       UU        -cc    c 

Annotation confidence Not enough data

Genome context

Contig30484: 8091-8207 [-]

Mature oan-miR-458-5p

• Accession: MIMAT0007009
• Description: Ornithorhynchus anatinus oan-miR-458-5p mature miRNA
• Sequence: 32 - AGCGCCAUUUUCAGAGCUAU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-458-3p

• Accession: MIMAT0007010
• Description: Ornithorhynchus anatinus oan-miR-458-3p mature miRNA
• Sequence: 68 - AUAGCUCUUUGAAUGGUACUGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004