miRBase entry: oan-mir-1362

Stem-loop oan-mir-1362


Accession
MI0006798
Description
Ornithorhynchus anatinus oan-mir-1362 precursor miRNA


Sequence

1143 reads, 39 reads per million, 2 experiments
cgacuggcuucuaggcggccggagucUACCCCGCCAACCGGACAGGAaaggcgugaagcgcuucCAGUCCAGCUGGACGGGGACGaggcaggccgaaccagagacaccccaccgacccccacguuagccacauucg
(((.((((((((.(((((((...((((.((((((((.(.((((.(((..(((((...)))))))).)))).).))).)))))...)))).)))))..)))))...........(((......))))))))...)))

Structure
   --c     -----------------------   a  --     gga    --A     -   A C    A   aa     g 
cga   uggcu                       ucu gg  cggcc   gucU   CCCCG CCA C GGAC GGA  ggcgu  
|||   |||||                       ||| ||  |||||   ||||   ||||| ||| | |||| |||  ||||| a
gcu   accga                       aga cc  gccgg   cgga   GGGGC GGU G CCUG Ccu  ucgcg  
   uac     uugcacccccagccaccccacag   -  aa     --a    GCA     A   C A    A   --     a 


Annotation confidence High
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Genome context
Contig37201: 8372-8507 [-]

Database links

Mature oan-miR-1362-5p

Accession MIMAT0007023
Description Ornithorhynchus anatinus oan-miR-1362-5p mature miRNA
Sequence 27 - UACCCCGCCAACCGGACAGGA - 47
Evidence experimental
Illumina [1]

Mature oan-miR-1362-3p

Accession MIMAT0007024
Description Ornithorhynchus anatinus oan-miR-1362-3p mature miRNA
Sequence 65 - CAGUCCAGCUGGACGGGGACG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004