Stem-loop oan-mir-33b

Accession

MI0006811

Description

Ornithorhynchus anatinus oan-mir-33b precursor miRNA

Gene family

MIPF0000070; mir-33

Sequence

2294 reads, 47 reads per million, 5 experiments

guuggccacugucGUGCAUUGUAGUUGCAUUGcacguuccggcaguacuggugCAAUGUUCCCACAGUGCAUUacagagacccgc
((.((.(.((((.(((((((((.(..((((((((....((((.....))))))))))))..).))))))))).)))).).)).))

Structure

  u  c a    c         A UU        cguu    c 
gu gg c cugu GUGCAUUGU G  GCAUUGca    ccgg a
|| || | |||| ||||||||| |  ||||||||    |||| g
cg cc g gaca UACGUGACA C  UGUAACgu    gguc u
  c  a a    U         C CU        ----    a 

Annotation confidence High

Genome context

Contig5096: 6920-7004 [-]

Mature oan-miR-33-5p

• Accession: MIMAT0006817
• Description: Ornithorhynchus anatinus oan-miR-33-5p mature miRNA
• Sequence: 14 - GUGCAUUGUAGUUGCAUUG - 32
• Evidence: experimental ; Illumina [1]

Mature oan-miR-33b-3p

• Accession: MIMAT0009191
• Description: Ornithorhynchus anatinus oan-miR-33b-3p mature miRNA
• Sequence: 54 - CAAUGUUCCCACAGUGCAUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004