miRBase entry: oan-mir-30d

Stem-loop oan-mir-30d


Accession
MI0006812
Description
Ornithorhynchus anatinus oan-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

1166818 reads, 18846 reads per million, 5 experiments
guuagaaauugcagagaaagucuguggcUGUAAACAUCCCCGACUGGAAGCuguaaaauaccuucaagCUUUCAGUCAGAUGUUUGCUACcacuggcauuucagagucauccacccguuucccuuuucuggc
((((((((.......(((((((.((((..(((((((((...(((((((((((..............))))))))))).)))))))))..)))).))).)))).((....)).............))))))))

Structure
        ---------------uugcaga    -   u    cU         CCC           guaaaa 
guuagaaa                      gaaa guc gugg  GUAAACAUC   GACUGGAAGCu      u
||||||||                      |||| ||| ||||  |||||||||   |||||||||||       
cggucuuu                      cuuu cgg cacC  CGUUUGUAG   CUGACUUUCga      a
        ucccuuugcccaccuacugaga    a   u    AU         --A           acuucc 


Annotation confidence High
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Genome context
Contig510: 32207-32338 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-30d-5p

Accession MIMAT0007041
Description Ornithorhynchus anatinus oan-miR-30d-5p mature miRNA
Sequence 29 - UGUAAACAUCCCCGACUGGAAGC - 51
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-30d-3p

Accession MIMAT0007042
Description Ornithorhynchus anatinus oan-miR-30d-3p mature miRNA
Sequence 69 - CUUUCAGUCAGAUGUUUGCUAC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004