miRBase entry: oan-mir-15b

Stem-loop oan-mir-15b


Accession
MI0006818
Description
Ornithorhynchus anatinus oan-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

801 reads, 28 reads per million, 5 experiments
aauccugcauguggaggccuuggacugcuaUAGCAGCACAUCAUGGUUUGCaugguauagccaagaugCGAAUCAUUAUUUGCUGCUUUagaaauuuaaggaaaagaaaccuuucaagacauggcuuauu
.......(((((((((((((((((...(((.(((((((.((.((((((((((((((...))))...)))))))))).)).))))))).)))...)))))))........)))))....))))).......

Structure
aauccug     ----     --------       cug   U       C  C          ---    a 
       caugu    ggagg        ccuugga   cua AGCAGCA AU AUGGUUUGCa   uggu  
       |||||    |||||        |||||||   ||| ||||||| || ||||||||||   |||| u
       guaca    uuucc        ggaauuu   gaU UCGUCGU UA UACUAAGCgu   accg  
uuauucg     gaac     aaagaaaa       aaa   U       U  U          aga    a 


Annotation confidence Not enough data
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Genome context
Contig5755: 7815-7944 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-15b-5p

Accession MIMAT0007050
Description Ornithorhynchus anatinus oan-miR-15b-5p mature miRNA
Sequence 31 - UAGCAGCACAUCAUGGUUUGC - 51
Evidence experimental
Illumina [1]

Mature oan-miR-15b-3p

Accession MIMAT0007051
Description Ornithorhynchus anatinus oan-miR-15b-3p mature miRNA
Sequence 69 - CGAAUCAUUAUUUGCUGCUUU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004