miRBase entry: oan-mir-16b

Stem-loop oan-mir-16b


Accession
MI0006819
Description
Ornithorhynchus anatinus oan-mir-16b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

3989 reads, 121 reads per million, 5 experiments
cugacauacuuauuacgcucUAGCAGCACGUAAAUAUUGGUGuagugaagucuuaaacCCCAAUAUUAUUGUGCUGCUuuagcgugauagggauugugcag
((((((..(((((((((((..(((((((((..((((((((.((((......))...)).))))))))..)))))))))..)))))))))))...))).)))

Structure
   -   -ua           cU         UA        U  ---  ug 
cug aca   cuuauuacgcu  AGCAGCACG  AAUAUUGG Gu   ag  a
||| |||   |||||||||||  |||||||||  |||||||| ||   ||   
gac ugu   ggauagugcga  UCGUCGUGU  UUAUAACC ca   uc  a
   g   uag           uu         UA        C  aau  ug 


Annotation confidence Not enough data
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Genome context
Contig5755: 7980-8080 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-16b-5p

Accession MIMAT0007052
Description Ornithorhynchus anatinus oan-miR-16b-5p mature miRNA
Sequence 21 - UAGCAGCACGUAAAUAUUGGUG - 42
Evidence experimental
Illumina [1]

Mature oan-miR-16b-3p

Accession MIMAT0007053
Description Ornithorhynchus anatinus oan-miR-16b-3p mature miRNA
Sequence 59 - CCCAAUAUUAUUGUGCUGCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004