miRBase entry: oan-mir-1421k-1

Stem-loop oan-mir-1421k-1


Accession
MI0006827
Description
Ornithorhynchus anatinus oan-mir-1421k-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

302 reads, 305 reads per million, 4 experiments
gaucccggcugaccuacggcauggugugAACAGGUUACCUGUGGUGCAGUguaguaguggaaaaagcUGCAUCAUGUGUGACCUGCCCacaccgcgccgugucucuccgucuggagauu
..........(((..(((((.(((((((..((((((((.(((((((((((...............))))))))))).))))))))..))))))).))))))))(((((....)))))..

Structure
------gaucccggcu   cu     a       AA        C           guagua 
                gac  acggc uggugug  CAGGUUAC UGUGGUGCAGU      g
                |||  ||||| |||||||  |||||||| |||||||||||      u
                cug  ugccg gccacaC  GUCCAGUG GUACUACGUcg      g
uuagaggucugccucu   --     c       CC        U           aaaaag 


Annotation confidence Not enough data
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Genome context
Contig7160: 751-869 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from oan-mir-1421k-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421k-5p

Accession MIMAT0007066
Description Ornithorhynchus anatinus oan-miR-1421k-5p mature miRNA
Sequence 29 - AACAGGUUACCUGUGGUGCAGU - 50
Evidence experimental
Illumina [1]

Mature oan-miR-1421k-1-3p

Accession MIMAT0007067
Description Ornithorhynchus anatinus oan-miR-1421k-1-3p mature miRNA
Sequence 68 - UGCAUCAUGUGUGACCUGCCC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004