Stem-loop sequence oan-mir-1421l-1

Accession MI0006828
Description Ornithorhynchus anatinus miR-1421l-1 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
gauc   c   gg     a         u  a u       gg  ag 
    uac gca  gugug aguggucac ug g ugcagug  gu  u
    ||| |||  ||||| ||||||||| || | |||||||  ||   
    gug cgu  cacau ucgccagug ac c augucgc  ca  g
--cu   c   ga     c         u  c u       -a  ag
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Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 1639-1731 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421l-1
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
oan-mir-1419a Contig7160: 5129-5224 [-]
oan-mir-1421g-2 Contig7160: 3551-3650 [-]
oan-mir-1421k-3 Contig7160: 2982-3100 [-]
oan-mir-1421l-1 Contig7160: 1639-1731 [-]
oan-mir-1421k-1 Contig7160: 751-869 [-]
Database links

Mature sequence oan-miR-1421l-5p

Accession MIMAT0007068
Previous IDs oan-miR-1421l
Sequence

19 -  

aaguggucacuugaguugcagu

 - 40

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421l-1-3p

Accession MIMAT0007069
Previous IDs oan-miR-1421l-1*
Sequence

58 -  

uguaucccaugugaccgcucu

 - 78

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).