miRBase entry: oan-mir-1421l-1

Stem-loop oan-mir-1421l-1


Accession
MI0006828
Description
Ornithorhynchus anatinus oan-mir-1421l-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

2607 reads, 1260 reads per million, 5 experiments
gaucuaccgcagggugugAAGUGGUCACUUGAGUUGCAGUgggguaguggaacacgcUGUAUCCCAUGUGACCGCUCUacacagugccguguc
....(((.(((..(((((.(((((((((.((.(.(((((((..((......)).))))))).).)).))))))))).)))))..))).)))..

Structure
gauc   c   gg     A         U  A U       gg  ag 
    uac gca  gugug AGUGGUCAC UG G UGCAGUg  gu  u
    ||| |||  ||||| ||||||||| || | |||||||  ||   
    gug cgu  cacaU UCGCCAGUG AC C AUGUcgc  ca  g
--cu   c   ga     C         U  C U       -a  ag 


Annotation confidence Not enough data
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Genome context
Contig7160: 1639-1731 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421l-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421l-5p

Accession MIMAT0007068
Description Ornithorhynchus anatinus oan-miR-1421l-5p mature miRNA
Sequence 19 - AAGUGGUCACUUGAGUUGCAGU - 40
Evidence experimental
Illumina [1]

Mature oan-miR-1421l-1-3p

Accession MIMAT0007069
Description Ornithorhynchus anatinus oan-miR-1421l-1-3p mature miRNA
Sequence 58 - UGUAUCCCAUGUGACCGCUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004