Stem-loop sequence oan-mir-1421m

Accession

MI0006830

Description

Ornithorhynchus anatinus miR-1421m stem-loop

Gene family

MIPF0000564; mir-1421

Stem-loop

ucca  uu  c   u  caua    a g     a             c      agu    g 
    gg  cc gaa ga    cggc c gugug ggacgucguacgu augcag   ugau g
    ||  || ||| ||    |||| | ||||| ||||||||||||| ||||||   |||| c
    cc  gg cuu cu    gucg g cacau ccugcagcgugcg uacguu   auua g
-aga  --  u   u  --cg    c a     c             u      -gu    g 

Genome context

• Coordinates (OANA5): Contig7160: 5522-5642 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oan-mir-1421m

• oan-mir-1421ak: Contig7160: 15306-15387 [-]
• oan-mir-1421i-3: Contig7160: 14496-14562 [-]
• oan-mir-1421r: Contig7160: 13915-14033 [-]
• oan-mir-1421q: Contig7160: 13103-13216 [-]
• oan-mir-1421p-1: Contig7160: 12428-12492 [-]
• oan-mir-1421i-2: Contig7160: 11366-11432 [-]
• oan-mir-1421o: Contig7160: 10811-10906 [-]
• oan-mir-1421g-3: Contig7160: 10086-10153 [-]
• oan-mir-1421k-2: Contig7160: 9501-9619 [-]
• oan-mir-1421l-2: Contig7160: 8702-8788 [-]
• oan-mir-1421n-1: Contig7160: 7381-7494 [-]
• oan-mir-1421m: Contig7160: 5522-5642 [-]
• oan-mir-1419a: Contig7160: 5129-5224 [-]
• oan-mir-1421g-2: Contig7160: 3551-3650 [-]
• oan-mir-1421k-3: Contig7160: 2982-3100 [-]
• oan-mir-1421l-1: Contig7160: 1639-1731 [-]
• oan-mir-1421k-1: Contig7160: 751-869 [-]

Database links

• ENTREZGENE: 100314723;MIR1421M

Mature sequence oan-miR-1421m-5p

• Accession: MIMAT0007072
• Previous IDs: oan-miR-1421m
• Sequence: 34 - aggacgucguacgucaugcaga - 55
• Evidence: experimental; Solexa [1]

Mature sequence oan-miR-1421m-3p

• Accession: MIMAT0007073
• Previous IDs: oan-miR-1421m*
• Sequence: 74 - ugcauugcgugcgacgucccua - 95
• Evidence: experimental; Solexa [1]

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).