Stem-loop sequence oan-mir-1421p-1

Accession MI0006833
Description Ornithorhynchus anatinus miR-1421p-1 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
   a           -  c      agu   g 
gug gggggccguac cu augcag   guu g
||| ||||||||||| || ||||||   ||| u
cac ccuccggcgug ga uacguc   uaa g
   c           u  -      cuu   g
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 12428-12492 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421p-1
oan-mir-1421u Contig7160: 21999-22110 [-]
oan-mir-1421n-2 Contig7160: 19257-19349 [-]
oan-mir-1421t Contig7160: 17958-18074 [-]
oan-mir-1421s Contig7160: 17153-17253 [-]
oan-mir-1421p-2 Contig7160: 16442-16565 [-]
oan-mir-1421ak Contig7160: 15306-15387 [-]
oan-mir-1421i-3 Contig7160: 14496-14562 [-]
oan-mir-1421r Contig7160: 13915-14033 [-]
oan-mir-1421q Contig7160: 13103-13216 [-]
oan-mir-1421p-1 Contig7160: 12428-12492 [-]
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
oan-mir-1419a Contig7160: 5129-5224 [-]
oan-mir-1421g-2 Contig7160: 3551-3650 [-]
oan-mir-1421k-3 Contig7160: 2982-3100 [-]
Database links

Mature sequence oan-miR-1421p-5p

Accession MIMAT0007078
Previous IDs oan-miR-1421p
Sequence

4 -  

agggggccguaccucaugcaga

 - 25

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421p-3p

Accession MIMAT0007079
Previous IDs oan-miR-1421p*
Sequence

43 -  

ugcauagugugcggccucccca

 - 64

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).