miRBase entry: oan-mir-1421s

Stem-loop oan-mir-1421s


Accession
MI0006836
Description
Ornithorhynchus anatinus oan-mir-1421s precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

234 reads, 227 reads per million, 3 experiments
cugaucuaccgcacggugugAGGUGGUCACUUGAGUUGCAGUgggguaguggaacacgcUGCAUCCCAUGUGACCGCCCUacacagugccaugucaugcag
.((((.....((((.(((((.(((((((((.((.(.(((((((..((......)).))))))).).)).))))))))).))))).))))...)))).....

Structure
----c    cuacc    g     A         U  A U       gg  ag 
     ugau     gcac gugug GGUGGUCAC UG G UGCAGUg  gu  u
     ||||     |||| ||||| ||||||||| || | |||||||  ||   
     acug     cgug cacaU CCGCCAGUG AC C ACGUcgc  ca  g
gacgu    --uac    a     C         U  C U       -a  ag 


Annotation confidence Not enough data
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Genome context
Contig7160: 17153-17253 [-]
Clustered miRNAs
17 other miRNAs are < 10 kb from oan-mir-1421s
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421s-5p

Accession MIMAT0007084
Description Ornithorhynchus anatinus oan-miR-1421s-5p mature miRNA
Sequence 21 - AGGUGGUCACUUGAGUUGCAGU - 42
Evidence experimental
Illumina [1]

Mature oan-miR-1421s-3p

Accession MIMAT0007085
Description Ornithorhynchus anatinus oan-miR-1421s-3p mature miRNA
Sequence 60 - UGCAUCCCAUGUGACCGCCCU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004