miRBase entry: oan-mir-1421t

Stem-loop oan-mir-1421t


Accession
MI0006837
Description
Ornithorhynchus anatinus oan-mir-1421t precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

96 reads, 171 reads per million, 1 experiments
auuccaucugacuuacagcacggugugAACAGGUUAAAUGUGGUGCAGUgugguaguggaaaacGCUGCAUCACGUGUGACCUCCccacaccgcgccgugucucuccgucuggagau
.........(((..((.((.(((((((...((((((.((((((((((((((...........)))))))))))))).))))))...))))))).)).)))))(((((....))))).

Structure
------auuccaucu   uu  a  a       AAC      A              ggua 
               gac  ac gc cggugug   AGGUUA AUGUGGUGCAGUgu    g
               |||  || || |||||||   |||||| ||||||||||||||    u
               cug  ug cg gccacac   UCCAGU UGCACUACGUCGca    g
uagaggucugccucu   --  c  c       cCC      G              aaag 


Annotation confidence Not enough data
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Genome context
Contig7160: 17958-18074 [-]
Clustered miRNAs
16 other miRNAs are < 10 kb from oan-mir-1421t
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421t-5p

Accession MIMAT0007086
Description Ornithorhynchus anatinus oan-miR-1421t-5p mature miRNA
Sequence 28 - AACAGGUUAAAUGUGGUGCAGU - 49
Evidence experimental
Illumina [1]

Mature oan-miR-1421t-3p

Accession MIMAT0007087
Description Ornithorhynchus anatinus oan-miR-1421t-3p mature miRNA
Sequence 65 - GCUGCAUCACGUGUGACCUCC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004