miRBase entry: oan-mir-150

Stem-loop oan-mir-150


Accession
MI0006840
Description
Ornithorhynchus anatinus oan-mir-150 precursor miRNA
Gene family
MIPF0000197; mir-150


Sequence

11331 reads, 200 reads per million, 5 experiments
cgccccucggcgcccccUCUCCCAACCCUUGUACCAGAGcauaaacugaaccCCUGGUACGGGGCCGUGGGAGAGggggagccggggccccgcg
.(((((..(((.((((((((((((..(((((((((((................)))))))))))...)))))))))))).))))))))......

Structure
-----c     uc   g            -AC           AGcauaa 
      gcccc  ggc cccccUCUCCCA   CCUUGUACCAG       a
      |||||  ||| ||||||||||||   |||||||||||        
      cgggg  ccg ggggGAGAGGGU   GGGGCAUGGUC       c
gcgccc     --   a            GCC           Cccaagu 


Annotation confidence High
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Genome context
Contig7207: 1834-1927 [+]

Database links

Mature oan-miR-150-5p

Accession MIMAT0007090
Description Ornithorhynchus anatinus oan-miR-150-5p mature miRNA
Sequence 18 - UCUCCCAACCCUUGUACCAGAG - 39
Evidence experimental
Illumina [1]

Mature oan-miR-150-3p

Accession MIMAT0007091
Description Ornithorhynchus anatinus oan-miR-150-3p mature miRNA
Sequence 53 - CCUGGUACGGGGCCGUGGGAGAG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004