miRBase entry: oan-mir-1422d

Stem-loop oan-mir-1422d


Accession
MI0006842
Description
Ornithorhynchus anatinus oan-mir-1422d precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

31609 reads, 14763 reads per million, 4 experiments
ggacugaccaucgugauucugauuucauuccaugcaaguguuuucuauauguauagauaauauUGAAAACCUUGUUUGGAUUGGCaucaguaugcaauuauauucucagagcc
...((((..((.(((((((((((.(((.((((.(((((.((((((.((((.........)))).))))))))))).)))).))).))))).....))))))))..))))....

Structure
-gga    cc  c      -----     u   u    u     u      u    gua 
    cuga  au gugauu     cugau uca ucca gcaag guuuuc auau   u
    ||||  || ||||||     ||||| ||| |||| ||||| |||||| ||||   a
    gacu  ua uauuaa     gacua GGU AGGU UGUUC CAAAAG uaua   g
ccga    cu  -      cguau     C   U    U     -      U    aua 


Annotation confidence Not enough data
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Genome context
Contig7359: 2122-2234 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1422d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422d-3p

Accession MIMAT0007094
Description Ornithorhynchus anatinus oan-miR-1422d-3p mature miRNA
Sequence 64 - UGAAAACCUUGUUUGGAUUGGC - 85
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004