miRBase entry: oan-mir-1422n

Stem-loop oan-mir-1422n


Accession
MI0006846
Description
Ornithorhynchus anatinus oan-mir-1422n precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

62 reads, 101 reads per million, 2 experiments
ccauccugauucugguuuCCUUCAAGGCAAAGGUUUUCUugagauaaugaugaucUAGACAACCCUGUCUUGAUUGAUaccagggucagauuauaacuaagagg
.....(((((((((((.((..((((((((..((((.(((..((((.......))))))).)))).))))))))..)).)))))))))))...............

Structure
----------ccauc           u  CU        AA    U   ug    aa 
               cugauucuggu uC  UCAAGGCA  GGUU UCU  agau  u
               ||||||||||| ||  ||||||||  |||| |||  ||||  g
               gacugggacca AG  AGUUCUGU  CCAA AGA  Ucua  a
ggagaaucaauauua           U  UU        -C    C   --    gu 


Annotation confidence Not enough data
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Genome context
Contig8388: 4641-4744 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from oan-mir-1422n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422n-5p

Accession MIMAT0007101
Description Ornithorhynchus anatinus oan-miR-1422n-5p mature miRNA
Sequence 19 - CCUUCAAGGCAAAGGUUUUCU - 39
Evidence experimental
Illumina [1]

Mature oan-miR-1422n-3p

Accession MIMAT0007102
Description Ornithorhynchus anatinus oan-miR-1422n-3p mature miRNA
Sequence 56 - UAGACAACCCUGUCUUGAUUGAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004