Stem-loop oan-mir-1376

Accession

MI0006848

Description

Ornithorhynchus anatinus oan-mir-1376 precursor miRNA

Sequence

20818 reads, 13595 reads per million, 4 experiments

gacuccuuaacagugcccugcagGCUCAGCAGCACUCUUUCUCAauuuuuuaacuauuUAGAAAGUUGGGCUGUUGAGAccguuggacauugacugauc
..........(((((.((.((.(((((((((((........((((((((((((....))))))))))))))))))))).)))).)).))))).......

Structure

gacuccuuaa     c  u  a  -         ACUCUUUC            c 
          cagug cc gc gG CUCAGCAGC        UCAauuuuuuaa u
          ||||| || || || |||||||||        ||||||||||||  
          guuac gg ug cc GAGUUGUCG        GGUUGAAAGAUu a
---cuaguca     a  u  -  A         --------            u 

Annotation confidence High

Genome context

Contig8388: 12485-12583 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-1376

Mature oan-miR-1376-5p

• Accession: MIMAT0007105
• Description: Ornithorhynchus anatinus oan-miR-1376-5p mature miRNA
• Sequence: 24 - GCUCAGCAGCACUCUUUCUCA - 44
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1376-3p

• Accession: MIMAT0007106
• Description: Ornithorhynchus anatinus oan-miR-1376-3p mature miRNA
• Sequence: 59 - UAGAAAGUUGGGCUGUUGAGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004