miRBase entry: oan-mir-1378

Stem-loop oan-mir-1378


Accession
MI0006852
Description
Ornithorhynchus anatinus oan-mir-1378 precursor miRNA


Sequence

36 reads, 2 reads per million, 4 experiments
guuuccccccgggGAAGUGCUGGGUGUUUGGGUGAggcuccgccgggauaccgcggcccacguggggccggggaggagggggcgcagcgcaccggaccgccagcucgccgagggcaggggac
((((((((((((.((...(((((..(((((((((..((.((.((......((.((((((.....)))))).))....)).)).))..))).))))))..))))))).))).)))..))))))

Structure
      --   -   g  AGU     GU      -   Ag  u  g  gggaua  g      a 
guuucc  ccc cgg GA   GCUGG  GUUUGG GUG  gc cc cc      cc cggccc c
||||||  ||| ||| ||   |||||  |||||| |||  || || ||      || |||||| g
cagggg  ggg gcc cu   cgacc  caggcc cgc  cg gg gg      gg gccggg u
      ac   a   g  ---     gc      a   ga  c  g  --agga  g      g 


Annotation confidence Not enough data
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Genome context
Contig9187: 10990-11111 [+]

Database links

Mature oan-miR-1378

Accession MIMAT0007110
Description Ornithorhynchus anatinus oan-miR-1378 mature miRNA
Sequence 14 - GAAGUGCUGGGUGUUUGGGUGA - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004