miRBase entry: oan-mir-31

Stem-loop oan-mir-31


Accession
MI0006853
Description
Ornithorhynchus anatinus oan-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

7160 reads, 157 reads per million, 5 experiments
cucagagcuggagagaAGGCAAGAUGUUGGCAUAGCUGUugaguuaagaaccUGCUAUGCCGACAUGUUGUCAUcuuucuugucuaucagcagccauggccagcuuuaauucucccuaucucuucuguuuacugag
(((((.((.(((((((.(((((.(((((((((((((.(((........)))..))))))))))))).))))).))))))).))....(((.((..((((..((........))..))))..)).)))....)))))

Structure
     -----------------------------------------------a  u       A     G             -U   gag 
cucag                                                gc ggagaga GGCAA AUGUUGGCAUAGC  GUu   u
|||||                                                || ||||||| ||||| |||||||||||||  |||    
gaguc                                                ug ucuuucU CUGUU UACAGCCGUAUCG  caa   u
     auuugucuucucuaucccucuuaauuucgaccgguaccgacgacuauc  u       A     G             Uc   gaa 


Annotation confidence High
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Genome context
Contig9317: 1749-1884 [+]

Database links

Mature oan-miR-31-5p

Accession MIMAT0007111
Description Ornithorhynchus anatinus oan-miR-31-5p mature miRNA
Sequence 17 - AGGCAAGAUGUUGGCAUAGCUGU - 39
Evidence experimental
Illumina [1]

Mature oan-miR-31-3p

Accession MIMAT0007112
Description Ornithorhynchus anatinus oan-miR-31-3p mature miRNA
Sequence 53 - UGCUAUGCCGACAUGUUGUCAU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004