miRBase entry: oan-mir-1380

Stem-loop oan-mir-1380


Accession
MI0006856
Description
Ornithorhynchus anatinus oan-mir-1380 precursor miRNA


Sequence

68 reads, 2 reads per million, 4 experiments
ugaugcagugaucaccaccuugucACAUCCCUUCUGUCUGCACCUGUggggaaaaucuuaagGUUUAGUCAGGUGGGGUGUGAcaaggaagucgaaagaauca
((((....((((.....((((((((((((((.((((.(((.((((..(((.....)))..)))).))).)))).))))))))))))))..)))).....))))

Structure
    -gcag    cacca              U    U   C    GU   g 
ugau     ugau     ccuugucACAUCCC UCUG CUG ACCU  ggg a
||||     ||||     |||||||||||||| |||| ||| ||||  ||| a
acua     gcug     ggaacAGUGUGGGG GGAC GAU UGga  ucu a
    agaaa    ---aa              U    U   U    au   a 


Annotation confidence Not enough data
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Genome context
Contig9960: 13260-13362 [+]

Database links

Mature oan-miR-1380-5p

Accession MIMAT0007116
Description Ornithorhynchus anatinus oan-miR-1380-5p mature miRNA
Sequence 25 - ACAUCCCUUCUGUCUGCACCUGU - 47
Evidence experimental
Illumina [1]

Mature oan-miR-1380-3p

Accession MIMAT0007117
Description Ornithorhynchus anatinus oan-miR-1380-3p mature miRNA
Sequence 63 - GUUUAGUCAGGUGGGGUGUGA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004