miRBase entry: oan-mir-551

Stem-loop oan-mir-551


Accession
MI0006863
Description
Ornithorhynchus anatinus oan-mir-551 precursor miRNA
Gene family
MIPF0000360; mir-551


Sequence

189 reads, 6 reads per million, 3 experiments
guggcuccuguggccccaGAAAUCAAGGAUGGGUGAGACCUcuugcacaaguggaagGCGACCCAUACUUGGUUUCAGgggcuuccggaaugc
.....(((.(.((((((.(((((((((..(((((..(.(((.((((....)))).)))).)))))..))))))))).)))))).).)))....

Structure
guggc   u u      a         GA     GA A   c    a 
     ucc g ggcccc GAAAUCAAG  UGGGU  G CCU uugc c
     ||| | |||||| |||||||||  |||||  | ||| ||||  
     agg c ucgggG CUUUGGUUC  ACCCA  C Gga ggug a
-cgua   c u      A         AU     -G -   a    a 


Annotation confidence High
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Genome context
Ultra195: 327215-327307 [-]

Database links

Mature oan-miR-551-5p

Accession MIMAT0007129
Description Ornithorhynchus anatinus oan-miR-551-5p mature miRNA
Sequence 19 - GAAAUCAAGGAUGGGUGAGACCU - 41
Evidence experimental
Illumina [1]

Mature oan-miR-551-3p

Accession MIMAT0007130
Description Ornithorhynchus anatinus oan-miR-551-3p mature miRNA
Sequence 58 - GCGACCCAUACUUGGUUUCAG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004