miRBase entry: oan-mir-1383

Stem-loop oan-mir-1383


Accession
MI0006864
Description
Ornithorhynchus anatinus oan-mir-1383 precursor miRNA


Sequence

uucucacuaaggcacaauggagccuuuuuucauaauggggaggguaucagaagccauaaguccuggcucacugguuuuuccUUGGUCCCCUUCCCCCCGgaaagaaacgcaggccuucauguagaa
.(((((..(((((........((.(((((((.....((((((((.(((((((((((..(((....)))...)))))))....)))).))))))))....)))))))..))..)))))..)).))).

Structure
u   -  cu     acaaugga  -c       auaau        u    ----       -ua   c 
 ucu ca  aaggc        gc  uuuuuuc     ggggaggg auca    gaagcca   agu c
 ||| ||  |||||        ||  |||||||     |||||||| ||||    |||||||   |||  
 aga gu  uuccg        cg  aagaaag     CCCUUCCC UGGU    uuuuggu   ucg u
a   u  ac     ------ga  ca       -GCCC        C    Uccu       cac   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Ultra209: 156559-156684 [+]

Database links

Mature oan-miR-1383

Accession MIMAT0007131
Description Ornithorhynchus anatinus oan-miR-1383 mature miRNA
Sequence 82 - UUGGUCCCCUUCCCCCCG - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004