miRBase entry: oan-mir-133c

Stem-loop oan-mir-133c


Accession
MI0006877
Description
Ornithorhynchus anatinus oan-mir-133c precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

65 reads, 6 reads per million, 5 experiments
guuggccagcugcuggggcuggucaaaaggaaccagaucgccucuccaccugaUUUGGUCCCCUUCAACCGGCUGcagcggguugccggc
((((((.(.((((((.(((((((..((.((.(((((((((..........))))))))).)).))..))))))).)))))).).))))))

Structure
      c g      g       ca  a  a         ccuc 
guuggc a cugcug ggcuggu  aa gg accagaucg    u
|||||| | |||||| |||||||  || || |||||||||     
cggccg u ggcgac UCGGCCA  UU CC UGGUUUagu    c
      u g      G       AC  C  C         ccac 


Annotation confidence Not enough data
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Genome context
Ultra299: 214696-214785 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-133c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-133c

Accession MIMAT0007150
Description Ornithorhynchus anatinus oan-miR-133c mature miRNA
Sequence 54 - UUUGGUCCCCUUCAACCGGCUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004