miRBase entry: oan-mir-21

Stem-loop oan-mir-21


Accession
MI0006883
Description
Ornithorhynchus anatinus oan-mir-21 precursor miRNA
Gene family
MIPF0000060; mir-21


Sequence

1361839 reads, 34317 reads per million, 5 experiments
aucuccacgacuggaccauccuaucggaUAGCUUAUCAGACUGAUGUUGAcuguuagaucuccuggCAACAGCAGUCGAUGGGCUGUCugacauuuugguaucugucauccgau
........(((.((((((.....((((((((((((((.(((((.(((....((((((.....))))))))).))))))))))))))))))).....)))).)).))).......

Structure
aucuccac   u  -    uccua              A     A   UGAc      a 
        gac gg acca     ucggaUAGCUUAUC GACUG UGU    uguuag u
        ||| || ||||     |||||||||||||| ||||| |||    |||||| c
        cug cu uggu     aguCUGUCGGGUAG CUGAC ACA    ACgguc u
-uagccua   u  a    uuuac              -     G   ----      c 


Annotation confidence High
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Genome context
Ultra324: 945547-945660 [+]

Database links

Mature oan-miR-21-5p

Accession MIMAT0007160
Description Ornithorhynchus anatinus oan-miR-21-5p mature miRNA
Sequence 29 - UAGCUUAUCAGACUGAUGUUGA - 50
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-21-3p

Accession MIMAT0007161
Description Ornithorhynchus anatinus oan-miR-21-3p mature miRNA
Sequence 67 - CAACAGCAGUCGAUGGGCUGUC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004