miRBase entry: oan-mir-1386

Stem-loop oan-mir-1386


Accession
MI0006884
Description
Ornithorhynchus anatinus oan-mir-1386 precursor miRNA


Sequence

478 reads, 32 reads per million, 5 experiments
agguuccggccagagugggCUCCUGGCUGGCUCGCCAgacuucuccaucaccguggauggcacgaccauccuucccgucccgcaggcccgcaaucu
((((((.((((...((((((....((.(((.((((((......(((((....)))))))))..))))).)).....).))))).)))).).)))))

Structure
     - c    aga     - -UCCU  C   C  --    gacuuc     c 
agguu c ggcc   guggg C     GG UGG UC  GCCA      uccau a
||||| | ||||   ||||| |     || ||| ||  ||||      |||||  
ucuaa g ccgg   cgccc g     cc acc ag  cggu      aggug c
     c c    --a     u cccuu  u   -  ca    ------     c 


Annotation confidence Not enough data
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Genome context
Ultra33: 1842778-1842873 [+]

Database links

Mature oan-miR-1386

Accession MIMAT0007162
Description Ornithorhynchus anatinus oan-miR-1386 mature miRNA
Sequence 20 - CUCCUGGCUGGCUCGCCA - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004