miRBase entry: oan-mir-15a

Stem-loop oan-mir-15a


Accession
MI0006886
Description
Ornithorhynchus anatinus oan-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

818 reads, 25 reads per million, 5 experiments
gaagacaccuugggguaaagUAGCAGCACAUAAUGGUUUGUgaguuuugaaauaCAGGCCAUAUUGUGCUGCCUCAaaaauacaaggaucugaucuuc
((((((((((((.......(..((((((((..((((((((((..........))))))))))..))))))))..).......)))))...)).)))))

Structure
     -  ---     ggguaaa UA        UA          aguu 
gaaga ca   ccuug       g  GCAGCACA  AUGGUUUGUg    u
||||| ||   |||||       |  ||||||||  ||||||||||     
cuucu gu   ggaac       C  CGUCGUGU  UACCGGACau    u
     a  cua     auaaaaA UC        UA          aaag 


Annotation confidence Not enough data
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Genome context
Ultra336: 5246216-5246313 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-15a-5p

Accession MIMAT0007164
Description Ornithorhynchus anatinus oan-miR-15a-5p mature miRNA
Sequence 21 - UAGCAGCACAUAAUGGUUUGU - 41
Evidence experimental
Illumina [1]

Mature oan-miR-15a-3p

Accession MIMAT0007165
Description Ornithorhynchus anatinus oan-miR-15a-3p mature miRNA
Sequence 55 - CAGGCCAUAUUGUGCUGCCUCA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004