miRBase entry: oan-mir-1388

Stem-loop oan-mir-1388


Accession
MI0006888
Description
Ornithorhynchus anatinus oan-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388


Sequence

39377 reads, 799 reads per million, 5 experiments
ucaguggggggcgugucuAGGACUGUCUAACCUGAGAAUGgugaugugugagggucaAUCUCAGGUUCGUCAGCCCAUGaaacgccuucuccaga
...(.(((((((((.((..((.(((.(.(((((((((....((((.(....).)))).))))))))).).))).))..)).))))))))).)...

Structure
uca u         g  uA  A   U U         AUGg    g g 
   g ggggggcgu uc  GG CUG C AACCUGAGA    ugau u u
   | ||||||||| ||  || ||| | |||||||||    |||| |  
   c ucuuccgca aG  CC GAC G UUGGACUCU    acug g g
aga c         a  UA  C   U C         ---A    g a 


Annotation confidence High
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Genome context
Ultra337: 3050146-3050240 [+]

Database links

Mature oan-miR-1388-5p

Accession MIMAT0007168
Description Ornithorhynchus anatinus oan-miR-1388-5p mature miRNA
Sequence 19 - AGGACUGUCUAACCUGAGAAUG - 40
Evidence experimental
Illumina [1]

Mature oan-miR-1388-3p

Accession MIMAT0007169
Description Ornithorhynchus anatinus oan-miR-1388-3p mature miRNA
Sequence 58 - AUCUCAGGUUCGUCAGCCCAUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004