Stem-loop oan-mir-214

Accession

MI0006889

Description

Ornithorhynchus anatinus oan-mir-214 precursor miRNA

Gene family

MIPF0000062; mir-214

Sequence

377 reads, 21 reads per million, 5 experiments

ugggacuggcuggacggaguugucacgugucUGCCUGUCUACACUUGCUGUgcagaacauccucucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaacccagccugacuga
.((....((((((.....(((((((.(((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))).)))))))))))))...))..

Structure

-u  gacu      acgga       c   u          ACA            aacau 
  gg    ggcugg     guuguca gug cUGCCUGUCU   CUUGCUGUgcag     c
  ||    ||||||     ||||||| ||| ||||||||||   ||||||||||||     c
  uc    ccgacc     caacagu cac GACGGACAGA   GGACGACAuguc     u
ag  -agu      -----       a   U          CAC            cacuc 

Annotation confidence High

Genome context

Ultra341: 2331532-2331649 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-214

Mature oan-miR-214-5p

• Accession: MIMAT0007170
• Description: Ornithorhynchus anatinus oan-miR-214-5p mature miRNA
• Sequence: 32 - UGCCUGUCUACACUUGCUGU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-214-3p

• Accession: MIMAT0007171
• Description: Ornithorhynchus anatinus oan-miR-214-3p mature miRNA
• Sequence: 73 - ACAGCAGGCACAGACAGGCAGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004