miRBase entry: oan-mir-128-2

Stem-loop oan-mir-128-2


Accession
MI0006892
Description
Ornithorhynchus anatinus oan-mir-128-2 precursor miRNA
Gene family
MIPF0000048; mir-128


Sequence

86565 reads, 1745 reads per million, 5 experiments
cagggcUGGCGAUUGGACAGCCGGAAGgggggccguuacacuguaagagagugaguaccaggucUCACAGUGAACCGGUCUCUUUcccgacuggaucuggcucccagacgg
.....((((.((((((((((.(((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))).)))..))))).))))))....

Structure
caggg    C  -     --   C   A          uua      aa    g gag 
     cUGG GA UUGGA  CAG CGG AGgggggccg   cacugu  gaga u   u
     |||| || |||||  ||| ||| ||||||||||   ||||||  |||| |    
     gacc cu ggucu  guc gcc UUUCUCUGGC   GUGACA  CUcu g   a
-ggca    -  c     ag   a   c          CAA      --    g acc 


Annotation confidence High
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Genome context
Ultra389: 820000-820110 [-]

Database links

Mature oan-miR-128-3p

Accession MIMAT0007006
Description Ornithorhynchus anatinus oan-miR-128-3p mature miRNA
Sequence 65 - UCACAGUGAACCGGUCUCUUU - 85
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-128-5p

Accession MIMAT0007175
Description Ornithorhynchus anatinus oan-miR-128-5p mature miRNA
Sequence 7 - UGGCGAUUGGACAGCCGGAAG - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004