miRBase entry: oan-mir-1396

Stem-loop oan-mir-1396


Accession
MI0006907
Description
Ornithorhynchus anatinus oan-mir-1396 precursor miRNA


Sequence

ucacagguagcaggauggaauagggauuaaggacauauaaauuaaggguagaggagggcccaaaggugggagaugagaguuuauuacuauuauuaucguaUCUGUUGAGUGUUUGCUGUGUuucaaacaugacucuaagcccuggga
...((((((((((..(((((((.((..((((.((...........((((........))))..(((((.(((((((.(((.....))).))))).)).))))).....)).)))))).)))))))..).))...)))...))))...

Structure
uca    ---   ---  - ga       g  au    g  auauaaauuaaggguagaggagggcccaa     g  -     g   u 
   cagg   uag   ca g  uggaaua gg  uaag ac                             aggug ga gauga agu u
   ||||   |||   || |  ||||||| ||  |||| ||                             ||||| || ||||| ||| a
   gucc   auc   gu c  acuuUGU UC  GUUU UG                             UCUau cu uuauu uca u
agg    cga   uca  a aa       G  --    G  ------------------------AGUUG     g  a     a   u 


Annotation confidence Not enough data
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Genome context
Ultra462: 356225-356371 [-]

Database links

Mature oan-miR-1396

Accession MIMAT0007198
Description Ornithorhynchus anatinus oan-miR-1396 mature miRNA
Sequence 101 - UCUGUUGAGUGUUUGCUGUGU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004