Stem-loop oan-mir-1405

Accession

MI0006917

Description

Ornithorhynchus anatinus oan-mir-1405 precursor miRNA

Sequence

193 reads, 10 reads per million, 5 experiments

uugacacugacuugcucuuUGGCCAAUGAUUGUGGCUGCAccugauucauuuuggUGCAGCAACAGCCAUUGGUCAUaaagcaaaccagccuccucaccuaaaa
..((..(((..(((((...(((((((((.((((.((((((((.((.....)).)))))))).)))).)))))))))...)))))..)))..))...........

Structure

---------uu  ca   ac     cuu         A    G        u  u 
           ga  cug  uugcu   UGGCCAAUG UUGU GCUGCAcc ga u
           ||  |||  |||||   ||||||||| |||| |||||||| || c
           cu  gac  aacga   ACUGGUUAC GACA CGACGUgg uu a
aaaauccacuc  cc   ca     aaU         C    A        u  u 

Annotation confidence Not enough data

Genome context

Ultra49: 504447-504550 [+]

Mature oan-miR-1405-5p

• Accession: MIMAT0007212
• Description: Ornithorhynchus anatinus oan-miR-1405-5p mature miRNA
• Sequence: 20 - UGGCCAAUGAUUGUGGCUGCA - 40
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1405-3p

• Accession: MIMAT0007213
• Description: Ornithorhynchus anatinus oan-miR-1405-3p mature miRNA
• Sequence: 56 - UGCAGCAACAGCCAUUGGUCAU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004