miRBase entry: oan-mir-138-1

Stem-loop oan-mir-138-1


Accession
MI0006919
Description
Ornithorhynchus anatinus oan-mir-138-1 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

102059 reads, 1947 reads per million, 5 experiments
gacagagcuuuuaagagaggcacagacgaccugaggcacgauacaaagaagcguggcucuuuccgcccugacuaccgguauggugaagcAGCUGGUGUUGUGAAUCAGGCCGucgccaaucugagaacggcuacuuc
...(((((((((.(((..(((...((((.(((((..((((((((..((..((.(.(((....(((..........)))...))).).))..)).))))))))..))))).)))))))..)))..))).)))).))..

Structure
gac  -    -   -a   ga   aca    a     gg        aa  aa  g g   cuuu   cccu 
   ag agcu uuu  aga  ggc   gacg ccuga  cacgauac  ag  gc u gcu    ccg    g
   || |||| |||  |||  |||   |||| |||||  ||||||||  ||  || | |||    |||     
   uc ucgg aag  ucu  ccg   cuGC GGACU  GUGUUGUG  UC  cg a ugg    ggc    a
-cu  a    c   ag   aa   ---    C     AA        -G  GA  a g   -uau   cauc 


Annotation confidence Not enough data
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Genome context
Ultra51: 5550449-5550585 [-]

Database links

Mature oan-miR-138-5p

Accession MIMAT0007216
Description Ornithorhynchus anatinus oan-miR-138-5p mature miRNA
Sequence 90 - AGCUGGUGUUGUGAAUCAGGCCG - 112
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004