miRBase entry: oan-mir-217

Stem-loop oan-mir-217


Accession
MI0006923
Description
Ornithorhynchus anatinus oan-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

7780 reads, 115 reads per million, 4 experiments
ccgagccgaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAuaauaaucagucacCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaacaagcuuccaug
..((((...((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))..)))).....

Structure
---cc    cga    uu     c c  a  C     C          U -   aau 
     gagc   guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
     ||||   ||||  ||||| | || || ||||| |||||||||| | |||    
     uucg   caaa  cuacg c uC GU ACGUA UCCUUGACUA c cug   a
guacc    -aa    -u     a u  C  U     A          C a   acu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig92704: 622-731 [+]

Database links

Mature oan-miR-217-5p

Accession MIMAT0007221
Description Ornithorhynchus anatinus oan-miR-217-5p mature miRNA
Sequence 27 - UACUGCAUCAGGAACUGAUUGGA - 49
Evidence experimental
Illumina [1]

Mature oan-miR-217-3p

Accession MIMAT0007222
Description Ornithorhynchus anatinus oan-miR-217-3p mature miRNA
Sequence 64 - CAUCAGUUCCUAAUGCAUUGCC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004