miRBase entry: oan-mir-1408

Stem-loop oan-mir-1408


Accession
MI0006925
Description
Ornithorhynchus anatinus oan-mir-1408 precursor miRNA


Sequence

11 reads, 20 reads per million, 1 experiments
gcccgcagaguuugagcgccuccucugccgguccuuccucggagagcgcuucgcucagccgauccgcggggcagggaCGGGGAGGGAGGGUGGUGcucaaaccgccgugucccgggc
(((((((..(((((((((((((((((.((.((((((((((((((((((...)))))......))))..))).)))))).))...)))))).))))))))))).....))...)))))

Structure
     ---  ---ga           -      --g  g      -   --    ------     c 
gcccg   ca     guuugagcgcc uccucu   cc guccuu ccu  cgga      gagcg  
|||||   ||     ||||||||||| ||||||   || |||||| |||  ||||      ||||| u
cgggc   gu     caaacucGUGG GGGAGG   GG Caggga ggg  gccu      cucgc  
     ccu  gccgc           U      GAG  G      c   gc    agccga     u 


Annotation confidence Not enough data
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Genome context
Ultra56: 5119291-5119407 [-]

Database links

Mature oan-miR-1408

Accession MIMAT0007225
Description Ornithorhynchus anatinus oan-miR-1408 mature miRNA
Sequence 78 - CGGGGAGGGAGGGUGGUG - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004