miRBase entry: oan-mir-1421w

Stem-loop oan-mir-1421w


Accession
MI0006936
Description
Ornithorhynchus anatinus oan-mir-1421w precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

guaugcagcauggcgugUGGAGGUUACACAUCAUGCCgugugaugcuggaauacgcUGCAUAGUGGGUGAUCUUCUUauccaguggugcgc
....(((.(((((.(((.(((((((((.(((.((((.(((((.(.....).))))).)))).))).))))))))).)))))).)).)))..

Structure
guau   g  -   c   U         A   C    C     a g 
    gca ca ugg gug GGAGGUUAC CAU AUGC gugug u c
    ||| || ||| ||| ||||||||| ||| |||| ||||| | u
    cgu gu acc uaU CUUCUAGUG GUG UACG cgcau a g
--cg   g  g   -   U         G   A    U     a g 


Annotation confidence Not enough data
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Genome context
X1: 44282896-44282986 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from oan-mir-1421w
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421w-5p

Accession MIMAT0007238
Description Ornithorhynchus anatinus oan-miR-1421w-5p mature miRNA
Sequence 18 - UGGAGGUUACACAUCAUGCC - 37
Evidence experimental
Illumina [1]

Mature oan-miR-1421w-3p

Accession MIMAT0007239
Description Ornithorhynchus anatinus oan-miR-1421w-3p mature miRNA
Sequence 57 - UGCAUAGUGGGUGAUCUUCUU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004