miRBase entry: oan-mir-1421y-1

Stem-loop oan-mir-1421y-1


Accession
MI0006939
Description
Ornithorhynchus anatinus oan-mir-1421y-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

154 reads, 191 reads per million, 2 experiments
auccaggcugaucuauggcacagugugAGGAGGGCACAUGUGGUACAGUgugagcguggaauaugcuucaucacaugugaccucacuucaccguacugugucuuugucuggau
((((((((.((.....(((((((((((((((((.((((((((.....(((.(((((((...)))))))))))))))))).)))).).))))...)))))))))).))))))))

Structure
        u  ucuau        ---    - -    G        GUACA   u       g 
auccaggc ga     ggcacagu   gugA G GAGG CACAUGUG     GUg gagcgug  
|||||||| ||     ||||||||   |||| | |||| ||||||||     ||| ||||||| a
uaggucug uu     cuguguca   cacu c cucc guguacac     uac uucguau  
        u  -----        ugc    u a    a        -----   -       a 


Annotation confidence Not enough data
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Genome context
X1: 44284866-44284978 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from oan-mir-1421y-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421y-5p

Accession MIMAT0007244
Description Ornithorhynchus anatinus oan-miR-1421y-5p mature miRNA
Sequence 28 - AGGAGGGCACAUGUGGUACAGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004