Stem-loop sequence oan-mir-1421z

Accession

MI0006940

Description

Ornithorhynchus anatinus miR-1421z stem-loop

Gene family

MIPF0000564; mir-1421

Stem-loop

    --ca       a c                      aua 
acgg    uggugug g aggucacguguggugcagcgug   g
||||    ||||||| | ||||||||||||||||||||||   u
ugcu    gccacau c uccagugugcgcuacgucguau   g
    ucac       c c                      aag 

Genome context

• Coordinates (OANA5): X1: 44289986-44290072 [-]
• Overlapping transcripts:

  antisense

  ENSOANT00000030955 ; F6S1K5_ORNAN; intron 2

  ENSOANT00000030955 ; intron 2

  ENSOANT00000030955 ; intron 2

Clustered miRNAs

< 10kb from oan-mir-1421z

• oan-mir-1421ab-1: X1: 44298540-44298604 [-]
• oan-mir-1419d: X1: 44298117-44298229 [-]
• oan-mir-1419c-2: X1: 44296776-44296886 [-]
• oan-mir-1421ag-1: X1: 44295490-44295574 [-]
• oan-mir-1421y-2: X1: 44294920-44295029 [-]
• oan-mir-1421ab-2: X1: 44293810-44293911 [-]
• oan-mir-1421aa: X1: 44291691-44291783 [-]
• oan-mir-1419c-1: X1: 44291006-44291114 [-]
• oan-mir-1421z: X1: 44289986-44290072 [-]
• oan-mir-1419b-2: X1: 44286185-44286299 [-]
• oan-mir-1421y-1: X1: 44284866-44284978 [-]
• oan-mir-1421x: X1: 44284340-44284425 [-]
• oan-mir-1419b-1: X1: 44283634-44283744 [-]
• oan-mir-1421w: X1: 44282896-44282986 [-]
• oan-mir-1421v: X1: 44282335-44282426 [-]

Database links

• ENTREZGENE: 100314679;MIR1421Z

Mature sequence oan-miR-1421z-5p

• Accession: MIMAT0007245
• Previous IDs: oan-miR-1421z
• Sequence: 14 - agcaggucacguguggugcag - 34
• Evidence: experimental; Solexa [1]

Mature sequence oan-miR-1421z-3p

• Accession: MIMAT0007246
• Previous IDs: oan-miR-1421z*
• Sequence: 53 - ugcaucgcgugugaccucccuac - 75
• Evidence: experimental; Solexa [1]

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).