miRBase entry: oan-mir-1421z

Stem-loop oan-mir-1421z


Accession
MI0006940
Description
Ornithorhynchus anatinus oan-mir-1421z precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

65 reads, 100 reads per million, 2 experiments
acggcauggugugAGCAGGUCACGUGUGGUGCAGcgugauaguggaauaugcUGCAUCGCGUGUGACCUCCCUACaccgcacuucgu
((((..(((((((.(.((((((((((((((((((((((.........)))))))))))))))))))))).).)))))))....))))

Structure
    --ca       A C                      aua 
acgg    uggugug G AGGUCACGUGUGGUGCAGcgug   g
||||    ||||||| | ||||||||||||||||||||||   u
ugcu    gccaCAU C UCCAGUGUGCGCUACGUcguau   g
    ucac       C C                      aag 


Annotation confidence Not enough data
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Genome context
X1: 44289986-44290072 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from oan-mir-1421z
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421z-5p

Accession MIMAT0007245
Description Ornithorhynchus anatinus oan-miR-1421z-5p mature miRNA
Sequence 14 - AGCAGGUCACGUGUGGUGCAG - 34
Evidence experimental
Illumina [1]

Mature oan-miR-1421z-3p

Accession MIMAT0007246
Description Ornithorhynchus anatinus oan-miR-1421z-3p mature miRNA
Sequence 53 - UGCAUCGCGUGUGACCUCCCUAC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004