Stem-loop sequence oan-mir-1419c-1

Accession

MI0006941

Description

Ornithorhynchus anatinus miR-1419c-1 stem-loop

Gene family

MIPF0000570; mir-1419

Stem-loop

   u -   acag     gu    ca a  u     a    u      ---   cu 
ucc g ggc    ugaug  caug  c gu cuggg gaug uaucac   gug  a
||| | |||    |||||  ||||  | || ||||| |||| ||||||   |||   
agg c ccg    acuac  guac  g ca gaccc cugc auagug   uac  u
   u g   -aga     ac    ac c  c     a    u      gcu   uc 

Genome context

• Coordinates (OANA5): X1: 44291006-44291114 [-]
• Overlapping transcripts:

  antisense

  ENSOANT00000030955 ; F6S1K5_ORNAN; intron 2

  ENSOANT00000030955 ; intron 2

  ENSOANT00000030955 ; intron 2

Clustered miRNAs

< 10kb from oan-mir-1419c-1

• oan-mir-1421ab-1: X1: 44298540-44298604 [-]
• oan-mir-1419d: X1: 44298117-44298229 [-]
• oan-mir-1419c-2: X1: 44296776-44296886 [-]
• oan-mir-1421ag-1: X1: 44295490-44295574 [-]
• oan-mir-1421y-2: X1: 44294920-44295029 [-]
• oan-mir-1421ab-2: X1: 44293810-44293911 [-]
• oan-mir-1421aa: X1: 44291691-44291783 [-]
• oan-mir-1419c-1: X1: 44291006-44291114 [-]
• oan-mir-1421z: X1: 44289986-44290072 [-]
• oan-mir-1419b-2: X1: 44286185-44286299 [-]
• oan-mir-1421y-1: X1: 44284866-44284978 [-]
• oan-mir-1421x: X1: 44284340-44284425 [-]
• oan-mir-1419b-1: X1: 44283634-44283744 [-]
• oan-mir-1421w: X1: 44282896-44282986 [-]
• oan-mir-1421v: X1: 44282335-44282426 [-]

Database links

• ENTREZGENE: 100314585;MIR1419C-1

Mature sequence oan-miR-1419c-5p

• Accession: MIMAT0007247
• Previous IDs: oan-miR-1419c
• Sequence: 27 - aguucugggagauguuaucacg - 48
• Evidence: experimental; Solexa [1]

Mature sequence oan-miR-1419c-3p

• Accession: MIMAT0007248
• Previous IDs: oan-miR-1419c*
• Sequence: 64 - ugauaucgucacccagcaccgc - 85
• Evidence: experimental; Solexa [1]

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).