miRBase entry: oan-mir-1419d

Stem-loop oan-mir-1419d


Accession
MI0006944
Description
Ornithorhynchus anatinus oan-mir-1419d precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

24 reads, 38 reads per million, 2 experiments
gcggugaacggcgauggcaucacacCCAGUGCUGGAGAUGUCAUCAcgugcuaccgcguuccaugAUGUCAUCCUCCAGCACCACGcguguccaucgggaaagauggaacggc
(((((((...((....)).)))).....((((((((((((.(((((((((....))))).....)))).))).)))))))))..)))((.((((((......))))))))...

Structure
--------------------------   gugaacggcgauggcaucacacCCA         -   U    -----     c 
                          gcg                         GUGCUGGAG AUG CAUC     Acgug u
                          |||                         ||||||||| ||| ||||     |||||  
                          cGC                         CACGACCUC UAC GUAg     ugcgc a
cggcaagguagaaagggcuaccugug   -----------------------AC         C   U    uaccu     c 


Annotation confidence High
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Genome context
X1: 44298117-44298229 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from oan-mir-1419d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419d-5p

Accession MIMAT0007253
Description Ornithorhynchus anatinus oan-miR-1419d-5p mature miRNA
Sequence 26 - CCAGUGCUGGAGAUGUCAUCA - 46
Evidence experimental
Illumina [1]

Mature oan-miR-1419d-3p

Accession MIMAT0007254
Description Ornithorhynchus anatinus oan-miR-1419d-3p mature miRNA
Sequence 66 - AUGUCAUCCUCCAGCACCACG - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004