miRBase entry: oan-mir-1421ac-1

Stem-loop oan-mir-1421ac-1


Accession
MI0006946
Description
Ornithorhynchus anatinus oan-mir-1421ac-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

1402 reads, 1989 reads per million, 4 experiments
gugauuccagcugaccuauggcacagugugAGGAGGACACAUGUGGUGCAGUgugcuaguggaauaugcUGCAUCAUGCGUAGCCUCCCCAAacuguguugugucucuccaucuggagguucau
((((((((((..((..(((((((((((.((.(((((..((.((((((((((((((.........)))))))))))))).))..))))).)).)))))))))))..)).....))))))..))))

Structure
    --      ---cu  cc           g  A     AC  A              cua 
guga  uuccag     ga  uauggcacagu ug GGAGG  AC UGUGGUGCAGUgug   g
||||  ||||||     ||  ||||||||||| || |||||  || ||||||||||||||   u
uacu  gagguc     cu  guguuguguca AC CCUCC  UG GUACUACGUcguau   g
    ug      uaccu  cu           A  C     GA  C              aag 


Annotation confidence Not enough data
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Genome context
X1: 44311290-44311413 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from oan-mir-1421ac-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421ac-5p

Accession MIMAT0007257
Description Ornithorhynchus anatinus oan-miR-1421ac-5p mature miRNA
Sequence 31 - AGGAGGACACAUGUGGUGCAGU - 52
Evidence experimental
Illumina [1]

Mature oan-miR-1421ac-3p

Accession MIMAT0007258
Description Ornithorhynchus anatinus oan-miR-1421ac-3p mature miRNA
Sequence 70 - UGCAUCAUGCGUAGCCUCCCCAA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004