miRBase entry: oan-mir-873

Stem-loop oan-mir-873


Accession
MI0006956
Description
Ornithorhynchus anatinus oan-mir-873 precursor miRNA
Gene family
MIPF0000390; mir-873


Sequence

1160 reads, 36 reads per million, 3 experiments
aaguuugugugcauuUGCAGGAACUUGUGAGUCUCCuauugaaaaugaacggGAGACUGGUGAGUUCCCGGGAAcacccacaaauuu
(((((((((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).)))))))))

Structure
         u ca   G A         G        a  ga 
aaguuugug g  uuU C GGAACUUGU AGUCUCCu uu  a
||||||||| |  ||| | ||||||||| |||||||| ||  a
uuuaaacac c  AAG G CCUUGAGUG UCAGAGgg aa  a
         c ac   G C         G        c  gu 


Annotation confidence High
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Genome context
X5: 21961543-21961629 [+]

Database links

Mature oan-miR-873-5p

Accession MIMAT0007272
Description Ornithorhynchus anatinus oan-miR-873-5p mature miRNA
Sequence 16 - UGCAGGAACUUGUGAGUCUCC - 36
Evidence experimental
Illumina [1]

Mature oan-miR-873-3p

Accession MIMAT0007273
Description Ornithorhynchus anatinus oan-miR-873-3p mature miRNA
Sequence 53 - GAGACUGGUGAGUUCCCGGGAA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004