miRBase entry: oan-mir-1417

Stem-loop oan-mir-1417


Accession
MI0006957
Description
Ornithorhynchus anatinus oan-mir-1417 precursor miRNA


Sequence

84 reads, 7 reads per million, 5 experiments
ccuccgaaaucagagaaacuGCUCGAUGAUGAUCUUCCuaaaugaugacuuuagcaaaagucaaaaaugacugcguuAUUUCACCGGUUCUGAGAGCAgcucgggaggagggugucugugggugguuagcuggcuucugg
...(((((.((((...(((((((((..(((.((((((((......(((((((....))))))).....(((((.((......)))))))(((((.....))))).)))))))))))..)))))))))..)))).))).))

Structure
ccu  -   a    aga         AU   G        aaaugaugacuuuagcaaaagucaaaaau     c  uA 
   cc gaa ucag   aacuGCUCG  GAU AUCUUCCu                             gacug gu  U
   || ||| ||||   |||||||||  ||| ||||||||                             ||||| ||   
   gg cuu gguc   uuggugggu  cug ugggagga                             UUGGC CA  U
---  u   c    -ga         gu   -        -------------gggcucgACGAGAGUC     -  CU 


Annotation confidence Low
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Genome context
Contig146923: 103-242 [-]

Database links

Mature oan-miR-1417-5p

Accession MIMAT0007274
Description Ornithorhynchus anatinus oan-miR-1417-5p mature miRNA
Sequence 21 - GCUCGAUGAUGAUCUUCC - 38
Evidence experimental
Illumina [1]

Mature oan-miR-1417-3p

Accession MIMAT0007275
Description Ornithorhynchus anatinus oan-miR-1417-3p mature miRNA
Sequence 78 - AUUUCACCGGUUCUGAGAGCA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004