miRBase entry: oan-mir-1418

Stem-loop oan-mir-1418


Accession
MI0006959
Description
Ornithorhynchus anatinus oan-mir-1418 precursor miRNA


Sequence

124 reads, 220 reads per million, 1 experiments
cuuccUAACUUCAGCGCCGAGGGUGGACguggcccuggccgaaggccgccucugccgcgguuagccaccgccuccccgcugccccUCCGGUCCGGGGUCCGAGCCcuuggccaucagugaccag
.......(((...(.(((((((((...((.(((((((((((..(((.((.......(((((.....)))))......)).)))....))).)))))))))).))))))))))...)))......

Structure
cuuccUA   UCA C         GGA  u        -   --aa   c  cucugcc     u 
       ACU   G GCCGAGGGU   Cg ggcccugg ccg    ggc gc       gcggu a
       |||   | |||||||||   || |||||||| |||    ||| ||       ||||| g
       uga   c cgguucCCG   GC CUGGGGCC GGC    ccg cg       cgcca c
-gaccag   cua -         --A  -        U   CUcc   u  -ccccuc     c 


Annotation confidence Not enough data
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Genome context
Contig4692: 20273-20396 [-]

Database links

Mature oan-miR-1418-5p

Accession MIMAT0007276
Description Ornithorhynchus anatinus oan-miR-1418-5p mature miRNA
Sequence 6 - UAACUUCAGCGCCGAGGGUGGAC - 28
Evidence experimental
Illumina [1]

Mature oan-miR-1418-3p

Accession MIMAT0007277
Description Ornithorhynchus anatinus oan-miR-1418-3p mature miRNA
Sequence 86 - UCCGGUCCGGGGUCCGAGCC - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004